Biolayer Interferometry | BLI
In order to derive the kinetics of a molecular interaction, the association and dissociation phases of the interaction have to be monitored over time. One very sensitive, robust, and precise way to do this is to detect the build-up of molecular complexes on a sensor-tip using the PALL FortéBio Octet® system. A sensor tip is used, which specifically binds one interaction partner; this can be done, for example, with the well-established biotin-streptavidin system and a biotinylated interaction partner. Initially, the sensor tip is dipped into a blank solution (e.g. buffer). Then, one interaction partner (e.g. a biotinylated antigen) is captured on the sensor tip surface and excess antigen is washed off with buffer. In order to monitor the association, the loaded sensor tip is then dipped into a solution containing the second interaction partner (e.g. an antibody). Finally, in order to monitor the dissociation, the sensor tip is dipped into blank buffer solution again, where the ligand (antibody) will dissociate over time from the coupled target (antigen). Certain sensor tips can also be regenerated and re-used for several experiments. Finally, fitting of the association and dissociation phases then provides the respective kon and koff rates.
Importantly, the Octet® system is label-free and does thus not require the modification of the interaction partners with fluorescent dyes for example. However, immobilization of one interaction partner has to be accepted in turn. The Octet® system is widely used for quantifying and analyzing the kinetics of molecular interactions involving small molecules, peptides, DNA and RNA molecules, proteins, antibodies, up to whole viruses and bacterial cells. For more information of molecular interactions that are possible to quantify with this systems, see “Typical applications”.
The Octet® K2 platform is based on the optical and label-free analytical technique called biolayer interferometry (BLI). BLI analyzes interference patterns of white light that is reflected from two optical layers of a very small (600 µM diameter) tip: One internal reference layer inside the tip and one layer at the interface between the tip and the surrounding liquid (Figure below, panel A). Each reflection generates constructive and destructive interferences that vary with the wavelength (Figure below, panel B, gray curve). Any change at the outer layer of the tip (a biocompatible surface with one interaction partner immobilized on it), for example due to binding of a ligand, leads to different interference patterns at this reflective layer. This, in turn, causes a shift of the interference spectrum to different wavelengths (Figure below, panel B, red curve). From the time-resolved monitoring of this shift, it is possible to derive real-time association and dissociation rates of the ligands in solution to the immobilized interaction partner at the tip surface.
BLI allows for the real-time determination of the interaction dissociation constant (KD), as well as the observed association (kon) and dissociation (koff) rate constants. A wide range of different sensor tip surfaces allows the precisely tailored immobilization of one interaction partner. Common techniques for immobilization are direct surface immobilization using amine-reactive coupling, biotin-streptavidin based coupling, anti-GST– or anti-histidine-tag based coupling, and antibody-based coupling. Thus, BLI using the Octet® system generates a complete kinetic profile of a molecular interaction and by that, for example, help with a more-fine grained analysis of molecular interactions with similar equilibrium affinities.
Here at 2bind, the state-of-the-art the PALL FortéBio Octet® K2 System is used. This BLI system features two parallel measurement channels, a 96-well sample plate format, excellent sensitivity down to analytes of 150 Da, and high reproducibility. A sample consumption of only 200 µL and the possibility to re-use a sample for multiple measurements enables that analysis of precious and difficult to obtain analytes. The Octet® K2 system features a dynamic range of association and dissociation rate constants of six orders of magnitude (kon: 101 – 107 M-1s-1, koff: 10-6 – 10-1 s-1). Affinities (KD) can be determined in the range from 10-3 – 10-11 M. The lower and upper boundaries for quantification are 0.05 µg/mL and 2000 µg/mL, respectively.
- Protein-protein interactions
- Antibody characterization
- Antibody-antigen binding
- Protein-small molecule interactions
- DNA-aptamer binding
- Bacteria-antibody interactions
- Virus-like particle-antibody/protein binding
- GPCR-protein binding
- Antibody quantitation
- ELISA replacement
- Protein quantitation in crude extracts
- Detection of contaminations
- DNA-aptamer screening
- Small molecule fragment screening
- Secondary screening and hit validation
- Inhibitor screening
Assay development applications
- Formulation development
- Media development
- Label-free detection method (no fluorescent dyes required)
- Free choice of assay buffers (also gylcerol or DMSO possible as solvents)
- Complete kinetic characterization (association and dissociation rate constants determinable)
- Numerous coupling methods (covalent and affinity-based coupling methods available)
- Measure at elevated temperatures (analysis possible up to 40°C)
- Measure in crude biological liquids (cell lysate, serum, plasma, environmental samples)
- Wide range of binding affinities (range from nM to mM affinities measurable)
- Wide range of possible molecules (from large VLPs to, under certain conditions, small molecules)
FAQ – General
What is BLI?
What parameters of a molecular interaction can be determined with BLI?
What is the slowest dissociation rate that can be measured?
The primary limitation for the measurement of very low dissociation rates is sample evaporation from the microplate wells.